Analysis of the evolution and variation characteristics of HA/NA genes of influenza A (H1N1) virus in Quanzhou City,Fujian Province in 2023

GONG Caiting, WU Xiaofeng, CHEN Mingchun, CHEN Zhiyang

Anhui Journal of Preventive Medicine ›› 2025, Vol. 31 ›› Issue (2) : 146-151.

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Anhui Journal of Preventive Medicine ›› 2025, Vol. 31 ›› Issue (2) : 146-151. DOI: 10.19837/j.cnki.ahyf.2025.02.013
Disease Control

Analysis of the evolution and variation characteristics of HA/NA genes of influenza A (H1N1) virus in Quanzhou City,Fujian Province in 2023

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Abstract

Objective To analyze the evolution and variation characteristics of the Hemagglutinin (HA) and Neuraminidase (NA) genes of influenza A (H1N1) virus in Quanzhou City,Fujian Province in 2023,and to provide data support for influenza prevention and control. Methods Real-time fluorescence quantitative PCR was used to perform nucleic acid detection of influenza surveillance specimens in Quanzhou City in 2023.The nucleic acid-positive specimens were then cultured,identified,and typed by MDCK cells.The positive strains of influenza A (H1N1) virus were selected for high-throughput third-generation sequencing.Nucleic acid was captured by efficient reverse transcription and whole genome amplification.The ligation method was used to sequence multiple sample DNA libraries for on-machine sequencing to obtain the HA and NA gene sequences of 18 influenza A (H1N1) viruses.The gene sequences of 37 viruses were downloaded from the NCBI virus library,and the Mega software was used to construct evolutionary trees for variation analysis. Results Eleven of the 18 influenza A (H1N1) virus strains were located in the same evolutionary branch and were closely related to the vaccine strain A/Victoria/4897/2022.The remaining seven strains were located in three branches and were genetically close to the influenza A (H1N1) viruses isolated from other regions in China in 2023.Compared with the vaccine strain A/Victoria/4897/2022,the HA gene and NA gene coding region fragments of the 18 influenza A (H1N1) strains had nucleotide variations.The major mutations of the HA gene included Q54K, N130K, S137P, R142K, A216T, R223Q, E260N/D, A277T, D356S/E, V418I/S, H454N/T, and the major mutations of the NA gene include D50N, K51Q, F66Y, S74F, K222N, E382G, K389I, I452T, M453V, N469K. Conclusion The HA and NA genes of the influenza A (H1N1) virus are gradually mutating in Quanzhou City in 2023.It is necessary to continue to monitor the evolution and mutation of the HA and NA genes of the influenza A(H1N1) virus in order to prevent the occurrence of a pandemic.

Key words

Influenza virus / Infjluenza A (H1N1) / Haemagglutinin / Neuraminidase / Gene evolution / Gene variation

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GONG Caiting , WU Xiaofeng , CHEN Mingchun , et al. Analysis of the evolution and variation characteristics of HA/NA genes of influenza A (H1N1) virus in Quanzhou City,Fujian Province in 2023[J]. Anhui Journal of Preventive Medicine. 2025, 31(2): 146-151 https://doi.org/10.19837/j.cnki.ahyf.2025.02.013

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目的 分析2016-2020年福建省A(H1N1)pdm09亚型流感病毒的血凝素(Hemagglutinin,HA)基因特征,了解与其他省份和全球范围内时间和空间上的分布差异。方法 选取2016-2020年福建省流感监测网络实验室分离A(H1N1)pdm09流感毒株基因序列测定。基因序列用MEGA、Net NGlyc 1.0 Server分析基因特征。结果 2016-2020年福建省A(H1N1)pdm09亚型流感病毒HA基因进化树分析与其他省份及国外大部分一致,但仍有少部分不同。HA分支由6B转化为6B.1并演化至6B.1A5A。HA基因变异主要在抗原性决定簇Sa、Ca、Sb。对于不同地区疫苗株匹配度也会有差异。结论 福建省A(H<sub>1</sub>N<sub>1</sub>)pdm09病毒流行株具有遗传多样性。
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